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Updated Regions of excessive sequencing depth (markdown)
Updated Home (markdown)
More details on primary outputs
Detail intermediate files as best I can
Updated Generating brass filter file (markdown)
Updated Intermediates and Filtering (markdown)
Add complete listing of intermediates archive
Warn about sort order of UCSC output.
Updated intermediates and filtering (markdown)
Created intermediates and filtering (markdown)
Updated Cytoband (markdown)
Updated Centromere Telomere locations (markdown)
minor expansion of sample column description.
Updated BEDPE (markdown)
added documentation to generate cytoband file