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16 Open 74 Closed
16 Open 74 Closed
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Issues list

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#119 opened Feb 28, 2024 by ruolin
Security vulnerabilities in current container image
#118 opened Jul 26, 2023 by verdurin
Iterations must be a positive integer: 0 at /opt/wtsi-cgp/bin/brass.pl line 83.
#117 opened Apr 23, 2023 by DingTin
2
No read groups listed
#115 opened Feb 15, 2023 by bettinabudeus
Poor inversion recall performance in BAM files with a high amount of variants
#114 opened Feb 10, 2023 by Rapsssito
3
Any way to ignore PL in bam?
#112 opened Sep 19, 2022 by anoronh4
4
Should be an existing file
#111 opened Jun 18, 2022 by mdbarnesUCSD
1
getting POS of 0
#110 opened May 16, 2022 by anoronh4
7
Regions of excessive sequencing depth for hg38
#109 opened May 9, 2022 by zhujack
1
less *.ngscn.segments.abs_cn.bg | cut -f1 | sort -u 1 2 3 4 5 6 7 8 9 X Y bug
#106 opened Jan 17, 2022 by jsmedmar
3
duplicate records for inversions
#105 opened Oct 12, 2021 by sb43
Bedtools problem with get_rg_cns.R
#104 opened Mar 1, 2021 by jsmedmar
Issue with creating tmp directory
#102 opened Nov 4, 2020 by anoronh4
Performance improvement - input step
#100 opened Jun 29, 2020 by keiranmraine
Document docker/singularity documentation
#97 opened Jun 9, 2020 by keiranmraine
unused argument (cytoband_file = cytoband_file) - caused by Rlib - gam incompatibility
#91 opened Dec 6, 2019 by podro182
4
ProTip! Exclude everything labeled bug with -label:bug.