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defuse reference docs - multiple issues

enhancement

Status: Open.

#42 In cancerit/cgpRna;

· keiranmraine opened on Mar 13, 2020

some complex tag values will still break output BAM header, even after hotfix 2.3.4

wontfix

Status: Open.

#33 In cancerit/cgpRna;

· byb121 opened on Aug 27, 2019

if a tag value in RG header of a input BAM has '\t' (the literal string not a tab), star_mapping.pl will break.

bug

Status: Open.

#32 In cancerit/cgpRna;

· byb121 opened on Aug 27, 2019

deFuse: Check the defuse config file is compatible with the referene and gene build

enhancement

Status: Open.

#7 In cancerit/cgpRna;

· amatchan opened on May 18, 2015

Allow bowtie index/reference files to be gzipped

enhancement

Status: Open.

#6 In cancerit/cgpRna;

· amatchan opened on May 14, 2015

Handle the scenario that no fusions are detected by TopHat-Fusion

enhancement

Status: Open.

#5 In cancerit/cgpRna;

· amatchan opened on May 12, 2015

Allow the normals filtering stage to be optional

enhancement

Status: Open.

#4 In cancerit/cgpRna;

· amatchan opened on May 12, 2015