Simplify repoas difficult to build expected outputs before we have a …

…final image
cancerit · Apr 2, 2019 · df99461 · df99461
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diff --git a/expected/README.md b/expected/README.md
diff --git a/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam b/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam
diff --git a/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.bai b/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.bai
diff --git a/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.bas b/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.bas
diff --git a/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.maptime b/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.maptime
diff --git a/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.md5 b/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.md5
diff --git a/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.met b/expected/cgpmap/bamBaiOut/bam_in/bam_in.bam.met
diff --git a/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam b/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam
diff --git a/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.bai b/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.bai
diff --git a/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.bas b/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.bas
diff --git a/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.maptime b/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.maptime
diff --git a/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.md5 b/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.md5
diff --git a/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.met b/expected/cgpmap/bamBaiOut/cram_in/cram_in.bam.met
diff --git a/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam b/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam
diff --git a/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam.bai b/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam.bai
diff --git a/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam.bas b/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam.bas
diff --git a/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam.maptime b/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam.maptime
diff --git a/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam.md5 b/expected/cgpmap/bamBaiOut/fq_gz_in/fq_gz_in.bam.md5