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Add verification step for raw GEO data vs. prepared CSV #105

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Add verification step for raw GEO data vs. prepared CSV #105

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Commits on Jul 21, 2024

  1. Add verification step for raw GEO data vs. prepared CSV 

    Show that the CSV file provided does in fact contain the same information as the raw data files deposited on GEO for each GSM.
    @ttriche
    ttriche authored Jul 21, 2024
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  2. Tidy up a little bit 

    One needs to use "[[" rather than `[[` in webR (I know not why). 

Also, breaking up the challenge solution with comments is more considerate of the learner's attention.
    @ttriche
    ttriche authored Jul 21, 2024
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Commits on Jul 22, 2024

  1. install GEOquery if not yet installed 

    like it says on the tin.  should ensure build check passes...
    @ttriche
    ttriche authored Jul 22, 2024
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  2. get rid of GEOquery dependency 

    Check that compiled counts are the same as from the raw data.
    @ttriche
    ttriche authored Jul 22, 2024
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