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Fixing copy so that custom columns in TimeIntervals are preserved. #122

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Fixing copy so that custom columns in TimeIntervals are preserved. #122

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14 changes: 13 additions & 1 deletion ecogvis/functions/nwb_copy_file.py
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Original file line number Diff line number Diff line change
Expand Up @@ -199,6 +199,17 @@ def nwb_copy_file(old_file, new_file, cp_objs={}, save_to_file=True):
for ind in np.arange(nInt):
obj.add_interval(start_time=obj_old['start_time'][ind],
stop_time=obj_old['stop_time'][ind])
# if there are custom variables
new_vars = list(obj_old.colnames)
default_vars = ['start_time', 'stop_time']
[new_vars.remove(var) for var in default_vars]
for var in new_vars:
dat = obj_old[var].data[:]
obj.add_column(
name=var,
description=obj_old[var].description,
data=dat.astype(str) if dat.dtype=='O' else dat
)
# Add to file
nwb_new.add_time_intervals(obj)

Expand Down Expand Up @@ -415,7 +426,8 @@ def copy_obj(obj_old, nwb_old, nwb_new):
resolution=obj_old.resolution,
conversion=obj_old.conversion,
starting_time=obj_old.starting_time,
unit=obj_old.unit
unit=obj_old.unit,
timestamps=obj_old.timestamps
)

# DecompositionSeries -----------------------------------------------------
Expand Down