Removal of deprecated directory and file types

[h-mayorquin]

The time has come and now handle this with Pydantic.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 87.22%. Comparing base (ffc4f1f) to head (08f785c).
Report is 2 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1442      +/-   ##
==========================================
+ Coverage   87.14%   87.22%   +0.08%     
==========================================
  Files         145      145              
  Lines        9635     9625      -10     
==========================================
- Hits         8396     8395       -1     
+ Misses       1239     1230       -9     

Flag	Coverage Δ
unittests	87.22% <100.00%> (+0.08%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
...rfaces/ecephys/neuralynx/neuralynxdatainterface.py	85.89% <ø> (ø)
...tainterfaces/ecephys/openephys/_openephys_utils.py	90.00% <ø> (ø)
.../ecephys/openephys/openephysbinarydatainterface.py	97.43% <ø> (ø)
.../ecephys/openephys/openephyslegacydatainterface.py	97.72% <ø> (ø)
...terfaces/ophys/femtonics/femtonicsdatainterface.py	88.07% <100.00%> (+0.07%)	⬆️
.../micromanagertiff/micromanagertiffdatainterface.py	100.00% <ø> (ø)
...tainterfaces/ophys/miniscope/miniscopeconverter.py	90.62% <ø> (ø)
src/neuroconv/tools/data_transfers/_globus.py	100.00% <ø> (ø)
src/neuroconv/tools/roiextractors/roiextractors.py	91.32% <100.00%> (ø)
...on_specification/_yaml_conversion_specification.py	88.76% <ø> (ø)
... and 1 more

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