Meson+pip

Author: DrYak

README.md

@@ -109,6 +109,18 @@ the configure script:
 
 After this, you can run the `configure` script as described previously.
 
+#### Meson
+
+For the developers who prefer this, it is alternatively possible to compile the C++ components with Meson and then install ShoRAH with pip in development mode using :
+
+```bash
+mkdir -p build
+cd build
+meson ../
+ninja
+cd ..
+pip3 install -e .
+```
 
 #### Windows users
 Since Windows 10, Microsoft provides the 

meson.build

@@ -1,14 +1,16 @@
 project(
   'shorah',
   'cpp',
-  version : '1.99.1',
+  version : run_command('build-aux/git-version-gen', '@0@/.tarball-version'.format(meson.source_root()), check : true).stdout().strip(),
   default_options : [
     'buildtype=release',
     'cpp_std=c++11',
     'warning_level=3',
     'b_ndebug=if-release'],
   license : 'GPL-2+',
-  meson_version : '>= 0.46.0')
+  meson_version : '>= 0.49.0')
+
+meson.add_dist_script('sh', '-c', 'echo @0@>"$MESON_DIST_ROOT/.tarball-version"'.format(meson.project_version()))
 
 # info
 as_version = meson.project_version()

setup.py

@@ -70,7 +70,7 @@ def run_tests(self):
     name='ShoRAH',
     description='SHOrt Reads Assembly into Haplotypes',
     url='http://github.com/cbg-ethz/shorah',
-    packages=find_packages('src'),  # include all packages under src
+    packages=find_packages(where='src'),  # include all packages under src
     package_dir={'': 'src'},  # tell setuptools packages are under src
     entry_points={
         'console_scripts': ['shorah = shorah.cli:main']