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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 136 46

Repositories

Showing 10 of 110 repositories
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 1 MIT 0 13 0 Updated Apr 30, 2025
  • mnem Public

    Mixture Nested Effects Models - https://doi.org/10.1093/bioinformatics/bty602 - https://bioconductor.org/packages/mnem

    cbg-ethz/mnem’s past year of commit activity
    R 4 3 0 0 Updated Apr 30, 2025
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 2 MIT 0 5 4 Updated Apr 29, 2025
  • LolliPop Public

    Deconvolution for Wastewater Genomics

    cbg-ethz/LolliPop’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 3 4 Updated Apr 29, 2025
  • PYggdrasil Public

    Inference and analysis of mutation trees in Python

    cbg-ethz/PYggdrasil’s past year of commit activity
    Python 6 MIT 0 4 0 Updated Apr 29, 2025
  • cojac Public
    cbg-ethz/cojac’s past year of commit activity
    Jupyter Notebook 19 GPL-3.0 5 12 2 Updated Apr 28, 2025
  • Influenza_wastewater_analysis Public
    cbg-ethz/Influenza_wastewater_analysis’s past year of commit activity
    R 0 0 1 0 Updated Apr 25, 2025
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 136 Apache-2.0 46 35 (5 issues need help) 5 Updated Apr 25, 2025
  • Jnotype Public

    Probabilistic modeling of high-dimensional binary data in JAX

    cbg-ethz/Jnotype’s past year of commit activity
    Python 3 0 6 2 Updated Apr 25, 2025
  • WisePulse Public

    WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

    cbg-ethz/WisePulse’s past year of commit activity
    Rust 1 MIT 0 4 0 Updated Apr 24, 2025
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