Search results

Upgrade SILO format for offset

enhancementNew feature or requestNew feature or request

Status: Open.

#302 In cbg-ethz/sr2silo;

· gordonkoehn opened on Jul 29, 2025

Ensure incomplete read merging does does not corrupt workflow, by leaving old file around

Status: Open.

#299 In cbg-ethz/sr2silo;

· gordonkoehn opened on Jul 21, 2025

remove pgk

Status: Open.

#297 In cbg-ethz/sr2silo;

· gordonkoehn opened on Jul 21, 2025

Enable automatic Loading of Snakemake in "./workflow/sr2silo_workflow.sbatch"

Status: Open.

#294 In cbg-ethz/sr2silo;

· gordonkoehn opened on Jul 17, 2025

Docs Github Action is run double when opening a Dev Branch PR

Status: Open.

#284 In cbg-ethz/sr2silo;

· gordonkoehn opened on Jul 11, 2025

Switch out http libary from requests to httpx

Status: Open.

#266 In cbg-ethz/sr2silo;

· gordonkoehn opened on Jun 30, 2025

feature: add option to pass protein database in <code>nuc_to_aa_alignment</code> avoid recombutation in parse_translate_align_in_batches

enhancementNew feature or requestNew feature or request

Status: Open.

#140 In cbg-ethz/sr2silo;

· gordonkoehn opened on Mar 5, 2025

test: validate single JSON from printed NDJSON

Status: Open.

#116 In cbg-ethz/sr2silo;

· gordonkoehn opened on Feb 25, 2025

test: implement check if aligment of amino acid read is in the same region as on the DNA level

test

Status: Open.

#90 In cbg-ethz/sr2silo;

· gordonkoehn opened on Feb 7, 2025

meta: sr2silo for Loculus Architecture

epicEpic task / Overarching issueEpic task / Overarching issue

Status: Open.

#45 In cbg-ethz/sr2silo;

· gordonkoehn opened on Nov 25, 2024