correction / simplification

Author: Gordon J. Köhn

Diff for: README.rst

@@ -172,10 +172,7 @@ After installation, all utilities are available as command-line programs. You ca
    aln2basecnt --help
    
    # Example usage of paired_end_read_merger
-   paired_end_read_merger input.sam output_fused.sam output_nonfused.sam reference.fasta
-   
-   # Example usage of extract_consensus
-   extract_consensus -b alignment.bam -r reference.fasta -o consensus.fasta
+   paired_end_read_merger input.sam -f reference.fasta -o output_fused.sam 
 
 Each utility supports the ``--help`` flag which provides detailed information about its usage, required arguments, and available options.