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Issues list

reconcile visium validation changes with multi-species validator tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1225 opened Jan 29, 2025 by ejmolinelli
@ejmolinelli
Draft uns reference to fragments and fragments index 5.3 Next minor CELLxGENE schema version after 5.2 schema CELLxGENE Discover dataset schema
#1223 opened Jan 28, 2025 by brianraymor
1
cellxgene-schema CLI must validate Sus scrofa and descendants 5.3 Next minor CELLxGENE schema version after 5.2 curation software orthologous
#1222 opened Jan 28, 2025 by brianraymor
cellxgene-schema CLI must validate Pan troglodytes 5.3 Next minor CELLxGENE schema version after 5.2 curation software orthologous
#1221 opened Jan 28, 2025 by brianraymor
cellxgene-schema CLI must validate Macaca mulatta 5.3 Next minor CELLxGENE schema version after 5.2 curation software orthologous
#1220 opened Jan 28, 2025 by brianraymor
cellxgene-schema CLI must validate Gorilla gorilla gorilla 5.3 Next minor CELLxGENE schema version after 5.2 curation software orthologous
#1219 opened Jan 28, 2025 by brianraymor
cellxgene-schema CLI must validate Callithrix jacchus 5.3 Next minor CELLxGENE schema version after 5.2 curation software orthologous
#1218 opened Jan 28, 2025 by brianraymor
Add genetic_ancestry documentation 5.3 Next minor CELLxGENE schema version after 5.2 editorial schema CELLxGENE Discover dataset schema
#1211 opened Jan 27, 2025 by brianraymor
@brianraymor
cellxgene-schema CLI must update genetic_ancestry 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1209 opened Jan 27, 2025 by brianraymor
@joyceyan
cellxgene-schema CLI must validate Drosophila melanogaster 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1203 opened Jan 24, 2025 by brianraymor
@joyceyan
cellxgene-schema CLI must validate Danio rerio 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1202 opened Jan 24, 2025 by brianraymor
@joyceyan
cellxgene-schema CLI must validate Caenorhabditis elegans 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1201 opened Jan 24, 2025 by brianraymor
@ejmolinelli
Validator outputs misleading errors when NaN values are in required Visium .obs columns 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1196 opened Jan 23, 2025 by Jchaffer787
@ejmolinelli
cellxgene-schema CLI must update validation for obs['assay_ontology_term_id'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1189 opened Jan 23, 2025 by brianraymor
@ejmolinelli
2
Draft requirements for term labels that appear in both taxon specific ontologies and taxon neutral ontologies multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1186 opened Jan 22, 2025 by brianraymor
@brianraymor
re-curate non-human/-mouse data for schema 5.3 5.3 Next minor CELLxGENE schema version after 5.2 curation Updates to published datasets
#1182 opened Jan 22, 2025 by jahilton
@jahilton
re-curate ATAC data for schema 5.3 5.3 Next minor CELLxGENE schema version after 5.2 curation Updates to published datasets
#1181 opened Jan 21, 2025 by jahilton
@jahilton
Add breed for small set of "livestock" species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1180 opened Jan 21, 2025 by brianraymor
@brianraymor
BUG: scipy 1.15.0 breaking validation bug Something isn't working tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1165 opened Jan 7, 2025 by Bento007
Draft Gallus gallus (chicken) drafting drafting schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1159 opened Dec 19, 2024 by brianraymor
@brianraymor
Draft Bos taurus (Cow) drafting drafting schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1156 opened Dec 18, 2024 by brianraymor
@brianraymor
[BUG] Bone marrow cell annotation in Tabula Muris Senis 10x bug Something isn't working curation Updates to published datasets
#1151 opened Dec 10, 2024 by bfurtwa
4
add clarity to document and tests to enforce categorical datatypes with string/object values. curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1146 opened Dec 3, 2024 by ejmolinelli
move stateful checks (e.g. is_visium, is_single) higher up in the validator to avoid potential state-related issues curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1125 opened Nov 21, 2024 by ejmolinelli
5 tasks
bug: anndata 0.11.0 breaking CLI bug Something isn't working curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1096 opened Nov 14, 2024 by Bento007
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