v0.31

This release fixes an important issue with RefSeq transcripts that align with gaps to the genome (issues #447 #450). Overall 500 genes are affected including MYH7! You probably want to upgrade to this release.

jannovar-core

• Introducing classes for representation of gapped sequences, alignments, and position projection.
• Fixing bug in ENSEMBL transcript database generation (tx version was appended twice)
• Adding flags for "has substitutions" and "has indels" to TranscriptModel that get filled for RefSeq transcripts.
• Correctly parsing of RefSeq transcripts with indels.

jannovar-cli

• Using HTTP protocol instead of FTP everywhere as it's possible (#451).
• Fixing HGVS conversion for indels (#452).