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Error in tree$edge[, 1][apply(p, 1, which.max)] : invalid subscript type 'list'

Status: Open.

#23 In chenweng1991/redeemR;

· Joyjoyjoyc opened on Sep 6, 2025

Matrix.utils is deprecated

Status: Open.

#22 In chenweng1991/redeemR;

· teng-gao opened on Jul 20, 2025

Seurat5 is on, convert data structure to v3

Status: Open.

#20 In chenweng1991/redeemR;

· shambam opened on Apr 11, 2025

How to extract specific cells from the redeem object for subsequent clonal evolution analysis？

Status: Open.

#19 In chenweng1991/redeemR;

· Joyjoyjoyc opened on Feb 10, 2025

where to got code:"link sc-multiome(GEX+ATAC) data"

Status: Open.

#18 In chenweng1991/redeemR;

· zhang0730 opened on Sep 24, 2024

Add_DepthMatrix no longer works

Status: Open.

#17 In chenweng1991/redeemR;

· mfansler opened on Sep 13, 2024

<code>d.lsi</code> not found error

Status: Open.

#16 In chenweng1991/redeemR;

· mfansler opened on Sep 2, 2024

Using <code>Processed=TRUE</code> should use <code>rdsname</code> argument

Status: Open.

#14 In chenweng1991/redeemR;

· mfansler opened on Aug 30, 2024

Version bump and release

Status: Open.

#12 In chenweng1991/redeemR;

· mfansler opened on Aug 26, 2024

Undeclared Matrix.utils dependency

Status: Open.

#11 In chenweng1991/redeemR;

· mfansler opened on Aug 15, 2024

detailed steps to filter mtSNVs

Status: Open.

#7 In chenweng1991/redeemR;

· chilampoon opened on Apr 24, 2024

combine multiple samples from one individual into a single tree

Status: Open.

#5 In chenweng1991/redeemR;

· Gravityzd opened on Mar 9, 2024