load covidcast in aggregation vignette #413
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # | |
| # Modifications: | |
| # * workflow_dispatch added to allow manual triggering of the workflow | |
| # * trigger branches changed | |
| # * API key secrets.DELPHI_GITHUB_ACTIONS_EPIDATA_API_KEY | |
| on: | |
| push: | |
| paths: | |
| [ | |
| "**.[rR]", | |
| "**.[qrR]md", | |
| "**.[rR]markdown", | |
| "**.[rR]nw", | |
| "**.[rR]profile", | |
| ] | |
| workflow_dispatch: | |
| name: Style | |
| jobs: | |
| style: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| DELPHI_EPIDATA_KEY: ${{ secrets.DELPHI_GITHUB_ACTIONS_EPIDATA_API_KEY }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::styler, any::roxygen2 | |
| needs: styler | |
| - name: Enable styler cache | |
| run: styler::cache_activate() | |
| shell: Rscript {0} | |
| - name: Determine cache location | |
| id: styler-location | |
| run: | | |
| cat( | |
| "location=", | |
| styler::cache_info(format = "tabular")$location, | |
| "\n", | |
| file = Sys.getenv("GITHUB_OUTPUT"), | |
| append = TRUE, | |
| sep = "" | |
| ) | |
| shell: Rscript {0} | |
| - name: Cache styler | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ steps.styler-location.outputs.location }} | |
| key: ${{ runner.os }}-styler-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-styler- | |
| ${{ runner.os }}- | |
| - name: Style | |
| run: styler::style_pkg() | |
| shell: Rscript {0} | |
| - name: Commit and push changes | |
| run: | | |
| if FILES_TO_COMMIT=($(git diff-index --name-only ${{ github.sha }} \ | |
| | egrep --ignore-case '\.(R|[qR]md|Rmarkdown|Rnw|Rprofile)$')) | |
| then | |
| git config --local user.name "$GITHUB_ACTOR" | |
| git config --local user.email "[email protected]" | |
| git commit ${FILES_TO_COMMIT[*]} -m "style: styler (GHA)" | |
| git pull --rebase | |
| git push origin | |
| else | |
| echo "No changes to commit." | |
| fi |