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Tweak&fix epi_slide docs regarding packing, nesting
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brookslogan committed Nov 14, 2024
1 parent 05a0ca8 commit 5ffaf2f
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55 changes: 42 additions & 13 deletions R/slide.R
Original file line number Diff line number Diff line change
Expand Up @@ -70,52 +70,81 @@
#' @export
#' @seealso [`epi_slide_opt`] for optimized slide functions
#' @examples
#' library(dplyr)
#'
#' # Get the 7-day trailing standard deviation of cases and the 7-day trailing mean of cases
#' cases_deaths_subset %>%
#' epi_slide(
#' cases_7sd = sd(cases, na.rm = TRUE),
#' cases_7dav = mean(cases, na.rm = TRUE),
#' .window_size = 7
#' ) %>%
#' dplyr::select(geo_value, time_value, cases, cases_7sd, cases_7dav)
#' select(geo_value, time_value, cases, cases_7sd, cases_7dav)
#' # Note that epi_slide_mean could be used to more quickly calculate cases_7dav.
#'
#' # In addition to the [`dplyr::mutate`]-like syntax, you can feed in a function or
#' # formula in a way similar to [`dplyr::group_modify`]:
#' my_summarizer <- function(window_data) {
#' window_data %>%
#' summarize(
#' cases_7sd = sd(cases, na.rm = TRUE),
#' cases_7dav = mean(cases, na.rm = TRUE)
#' )
#' }
#' cases_deaths_subset %>%
#' epi_slide(
#' ~ my_summarizer(.x),
#' .window_size = 7
#' ) %>%
#' select(geo_value, time_value, cases, cases_7sd, cases_7dav)
#'
#'
#' # The same as above, but unpacking using an unnamed data.frame with a formula
#'
#'
#'
#' #### Advanced: ####
#'
#' # The tidyverse supports ["packing"][tidyr::pack] multiple columns into a
#' # single tibble-type column contained within some larger tibble. Like dplyr,
#' # we normally don't pack output columns together, but will if you provide a
#' # name for a tibble-type output:
#' cases_deaths_subset %>%
#' epi_slide(
#' ~ data.frame(
#' slide_packed = tibble(
#' cases_7sd = sd(.x$cases, na.rm = TRUE),
#' cases_7dav = mean(.x$cases, na.rm = TRUE)
#' ),
#' .window_size = 7
#' ) %>%
#' dplyr::select(geo_value, time_value, cases, cases_7sd, cases_7dav)
#'
#' # The same as above, but packing using a named data.frame with a tidy evaluation
#' # expression
#' select(geo_value, time_value, cases, slide_packed)
#' cases_deaths_subset %>%
#' epi_slide(
#' slide_packed = data.frame(
#' ~ tibble(
#' cases_7sd = sd(.x$cases, na.rm = TRUE),
#' cases_7dav = mean(.x$cases, na.rm = TRUE)
#' ),
#' .new_col_name = "slide_packed",
#' .window_size = 7
#' ) %>%
#' dplyr::select(geo_value, time_value, cases, slide_packed)
#' select(geo_value, time_value, cases, slide_packed)
#'
#' # nested new columns
#' # You can also get ["nested"][tidyr::nest] format by wrapping your results in
#' # a list:
#' cases_deaths_subset %>%
#' group_by(geo_value) %>%
#' epi_slide(
#' function(x, g, t) {
#' data.frame(
#' list(tibble(
#' cases_7sd = sd(x$cases, na.rm = TRUE),
#' cases_7dav = mean(x$cases, na.rm = TRUE)
#' )
#' ))
#' },
#' .window_size = 7
#' ) %>%
#' ungroup() %>%
#' dplyr::select(geo_value, time_value, cases, cases_7sd, cases_7dav)
#' select(geo_value, time_value, slide_value)
#'
#'
#'
#' # Use the geo_value or the ref_time_value in the slide computation
#' cases_deaths_subset %>%
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55 changes: 42 additions & 13 deletions man/epi_slide.Rd

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6 changes: 2 additions & 4 deletions man/epi_slide_opt.Rd

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