This is the GitHub organization of the Computational Medicine Group based in the QMUL PHURI (London) and the BIH@Charité (Berlin).
For recent results and studies please visit www.omicscience.org.
Computational Medicine Lab
Computational Medicine Group based in London (QMUL PHURI) and Berlin (BIH@Charité)
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sparse-proteomic-prediction-of-common-and-rare-diseases
sparse-proteomic-prediction-of-common-and-rare-diseases PublicThis repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI pending) The provided scripts are not designed to work out …
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gwascatftp
gwascatftp PublicForked from cfbeuchel/gwascatftp
R package to access GWAS Catalog FTP data
R 3
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Repositories
Showing 10 of 18 repositories
- protein-foundations-ukb-olink-50k Public
A code repository for the paper https://www.medrxiv.org/content/10.1101/2025.01.09.25320257v1
comp-med/protein-foundations-ukb-olink-50k’s past year of commit activity - r-prodente Public
Companion R package for a publication to run enrichment analysis across protein determining factors
comp-med/r-prodente’s past year of commit activity - nf-download-sumstats Public
Nextflow pipeline for downloading raw GWAS summary statistics to be then processed using `nf-munge-sumstats`
comp-med/nf-download-sumstats’s past year of commit activity - nf-munge-sumstats Public
Nextflow pipeline to download and format (i.e. munge) GWAS summary statistics
comp-med/nf-munge-sumstats’s past year of commit activity - project-template Public template
A suggested directory and file structure for analysis projects in the computational medicine group
comp-med/project-template’s past year of commit activity - nf-nmr-coloc Public
Nextflow pipeline to run metabolome-wide colocalization analysis based on the `nf-scallop-coloc` pipeline.
comp-med/nf-nmr-coloc’s past year of commit activity - nf-template Public template
Template directory for Nextflow pipelines providing basic files and directories when setting up a new workflow
comp-med/nf-template’s past year of commit activity
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