update setup conda in CI (#515) #1327

	name: "Pull Request Docs Check"
	on:
	- push

	defaults:
	run:
	shell: bash -l {0}

	jobs:
	docs:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	with:
	fetch-depth: '0'

	- name: Setup env
	uses: mamba-org/setup-micromamba@v2
	with:
	miniforge-variant: Mambaforge
	miniforge-version: latest
	activate-environment: lstmcpipe
	use-mamba: true
	environment-file: environment.yml
	cache-environment: true

	- name: Install additional packages
	shell: bash -el {0}
	run: \|
	micromamba install -n lstmcpipe -c conda-forge make pandoc

	- name: Build docs
	run: \|
	git config --global --add safe.directory '*'
	cd docs
	make html
	cd ..
	- uses: actions/upload-artifact@v4
	with:
	name: DocumentationHTML
	path: docs/_build/html/
	- name: Deploy to github pages
	# only run on push to master
	if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/master' }}
	uses: JamesIves/[email protected]
	with:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	BRANCH: gh-pages
	FOLDER: docs/_build/html
	CLEAN: true
	SINGLE_COMMIT: true

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