Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Abstract hardcoded Assay_Plate_Barcode option to config #8

Open
gwaybio opened this issue Dec 14, 2020 · 0 comments
Open

Abstract hardcoded Assay_Plate_Barcode option to config #8

gwaybio opened this issue Dec 14, 2020 · 0 comments
Labels
documentation Improvements or additions to documentation enhancement New feature or request

Comments

@gwaybio
Copy link
Member

gwaybio commented Dec 14, 2020

In https://github.com/jump-cellpainting/profiling-recipe/pull/14/files#diff-b9d876056b6394f85313599f3b2cf8500f517537c9a8f519afb74c6b13712f0aR47 (note, private repo) the variable Assay_Plate_Barcode is hardcoded.

We should add this variable to an advanced.yaml config file to avoid the scenario in which this column name changes, breaking the pipeline.
@gwaybio gwaybio added documentation Improvements or additions to documentation enhancement New feature or request labels Dec 14, 2020
@gwaybio gwaybio mentioned this issue Dec 14, 2020
Open
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
documentation Improvements or additions to documentation enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@gwaybio