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Save motifs and tracks in mongo #19

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merged 1 commit into from
Nov 8, 2024
Merged

Save motifs and tracks in mongo #19

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2 changes: 1 addition & 1 deletion src/client/components/network-editor/controller.js
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Original file line number Diff line number Diff line change
Expand Up @@ -503,7 +503,7 @@ export class NetworkEditorController {
fetch(`/api/${this.networkIDStr}`, {
method: 'PUT',
headers: { 'Content-Type': 'application/json' },
body: JSON.stringify({ networkName })
body: JSON.stringify({ name: networkName })
});
}

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4 changes: 1 addition & 3 deletions src/client/components/network-editor/index.js
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Expand Up @@ -69,11 +69,9 @@ async function loadNetwork(id, cy, controller, recentNetworksController) {
}
const networkJson = await networkResult.json();

cy.add(networkJson.network.elements);
cy.data({
name: networkJson.networkName,
name: networkJson.name,
parameters: networkJson.parameters,
geneSetCollection: networkJson.geneSetCollection,
demo: Boolean(networkJson.demo)
});

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13 changes: 4 additions & 9 deletions src/client/components/report/report.js
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
import React, { useState, useEffect } from 'react';
import PropTypes from 'prop-types';
import { getComparator } from '../network-editor/data-table';
import { getComparator } from '../util';
import { Select, MenuItem } from '@mui/material';
import { Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Paper } from '@mui/material';
import makeStyles from '@mui/styles/makeStyles';
Expand Down Expand Up @@ -31,6 +31,7 @@ async function fetchReport(secret) {

const counts = await countRes.json();
const networks = await networkRes.json();
console.log(counts, networks);

return { counts, networks };
} catch(err) {
Expand Down Expand Up @@ -68,7 +69,7 @@ export function Report({ secret }) {
Sort:
  
<Select value={orderBy} onChange={(event) => setOrderBy(event.target.value)} className={classes.orderBy}>
<MenuItem value="networkName">Name</MenuItem>
<MenuItem value="name">Name</MenuItem>
<MenuItem value="creationTime">Creation Time</MenuItem>
<MenuItem value="lastAccessTime">Last Accessed Time</MenuItem>
</Select>
Expand All @@ -84,9 +85,6 @@ export function Report({ secret }) {
<TableHead>
<TableRow>
<TableCell><b>Network Name</b></TableCell>
<TableCell align="right"><b>Nodes</b></TableCell>
<TableCell align="right"><b>Edges</b></TableCell>
<TableCell align="right"><b>Type</b></TableCell>
<TableCell align="right"><b>Creation Time</b></TableCell>
<TableCell align="right"><b>Last Access Time</b></TableCell>
<TableCell align="right"> </TableCell>
Expand All @@ -101,10 +99,7 @@ export function Report({ secret }) {
key={network._id}
sx={{ '&:last-child td, &:last-child th': { border: 0 } }}
>
<TableCell component="th" scope="row">{network.networkName}</TableCell>
<TableCell align="right">{network.nodeCount}</TableCell>
<TableCell align="right">{network.edgeCount}</TableCell>
<TableCell align="right">{network.inputType}</TableCell>
<TableCell component="th" scope="row">{network.name}</TableCell>
<TableCell align="right">{createTime}</TableCell>
<TableCell align="right">{accessTime}</TableCell>
<TableCell align="right"><a href={`/document/${network._id}`} target="_blank" rel = "noopener noreferrer">open</a></TableCell>
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