This branch is 5381 commits behind bgruening/galaxytools:master.

Name	Name	Last commit message	Last commit date
Latest commit davebx Tabs to spaces. Jul 1, 2014 e33d1f8 · Jul 1, 2014 History 1,341 Commits
EDeN/EDeN	EDeN/EDeN	restructure EDeN wrappers	Jun 12, 2014
R_mixed	R_mixed	new pdfs	Mar 4, 2014
antismash	antismash	change copyright data	May 2, 2014
augustus	augustus	add parallelism and a new way to handle outputs	Dec 5, 2013
bedtools	bedtools	add new bedtools wrappers	Jun 19, 2014
biopython	biopython	update fragmentation wrappers to the 0.2 version	Jan 19, 2013
bismark_wrapper	bismark_wrapper	bugfix for file type extension dependent parameter setting within rep…	Jun 23, 2014
blockbuster	blockbuster	Merge branch 'master' of https://github.com/bgruening/galaxytools	Oct 21, 2013
blockclust	blockclust	workflow name changed	May 7, 2014
chemicaltoolbox	chemicaltoolbox	Update README.rst	Jun 10, 2014
crt	crt	rename test file	May 3, 2014
datatypes/msa_datatypes	datatypes/msa_datatypes	add readme file and stockholm example file	Sep 8, 2013
deseq2	deseq2	update to new DESeq2 version	Feb 20, 2014
diffbind	diffbind	update to latest R version	Mar 16, 2014
dna_tools/twistdna	dna_tools/twistdna	remove unused environment definition	Feb 23, 2014
file_manipulation	file_manipulation	add obsolete but still in use uniq tools	Sep 8, 2013
gatk2	gatk2	Re-add "--sample_ploidy" parameter as suggested by Geert Vandeweyer.	Jun 27, 2014
general_mapping	general_mapping	add general mapping tool, to map different ids	Jan 3, 2013
genome_annotation_pipeline	genome_annotation_pipeline	adopt the balst parsing to new uniprot standards	Feb 25, 2014
glimmer3	glimmer3	Update readme.rst	Aug 7, 2013
glimmer_hmm	glimmer_hmm	add glimmer-HMM wrapper	Dec 6, 2012
graph_converter	graph_converter	added graphconveter	Mar 4, 2014
graphclust	graphclust	add requirements to graphclust	Nov 8, 2013
homer	homer	fix dependencies	Mar 21, 2014
illumina_methylation_analyser	illumina_methylation_analyser	add a wrapper for the Illumina Methylation Analyzer (IMA)	Dec 9, 2012
image_processing	image_processing	writing cheetah code	Apr 25, 2014
iprscan	iprscan	update readme and lincense. Point to the new interproscan5 wrapper.	Oct 8, 2013
iprscan5	iprscan5	spelling fix (thanks Peter) and updated license	Oct 8, 2013
macs2	macs2	fix bug reported by Sebastian	Jun 12, 2014
mcl	mcl	BlockClust wokflow documentation	Jan 21, 2014
meta_package_dependencies/chemicaltoolbox	meta_package_dependencies/chemicaltoolbox	add the new machine learning technique to ctb metapackage	Jun 4, 2013
methtools	methtools	add pysam as requirement	Jun 28, 2014
miclip	miclip	add version string to the wrapper	Mar 3, 2014
minced	minced	increase the split_size value	May 6, 2014
molecule2gspan	molecule2gspan	fix copy and paste error	Apr 17, 2014
orphan_tool_dependencies	orphan_tool_dependencies	Tabs to spaces.	Jul 1, 2014
perf	perf	enhance documentation	May 15, 2014
prinseq	prinseq	prinseq updates	Oct 7, 2013
proteomics/improviser	proteomics/improviser	add split_file_on_column	Dec 17, 2013
repeat_masker	repeat_masker	Add sheep as option, thanks to Simon Guest.	Sep 17, 2013
rest_tool	rest_tool	enhancements to the different pubchem rest tools	Jun 23, 2014
rna_tools	rna_tools	style fixes	Jun 23, 2014
samtools_sort	samtools_sort	add new test data	Jun 23, 2014
sed_wrapper	sed_wrapper	add a wrapper for the sed commandline tool	Dec 6, 2012
segemehl	segemehl	small documentation fixes for segemehl	Jan 18, 2014
sequence2gspan	sequence2gspan	typo fix	Oct 29, 2013
snpeff	snpeff	Require SnpEff 3.6 .	May 1, 2014
statistics	statistics	add a wrapper for common statistics like T-test for one file only wit…	Aug 28, 2013
test_repositories	test_repositories	update to latest R version	Mar 16, 2014
text_processing	text_processing	upgrade to GNU coreutils 8.22 to fix a build bug on cluster environments	Jun 5, 2014
trim_galore_wrapper	trim_galore_wrapper	style fixes	Oct 7, 2013
visualise_annotation	visualise_annotation	add a annotation plotting wrapper	Dec 9, 2012
workflows	workflows	create an inital EDeN workflow	May 15, 2014
.gitignore	.gitignore	update gitignore	Jan 24, 2014
README.md	README.md	Update README.md	Aug 31, 2013
TODO	TODO	update TODO list	Aug 31, 2013
create_tool_conf.py	create_tool_conf.py	not all tools are chemcial toolbox tools	Jan 11, 2013
kill_toolshed.sh	kill_toolshed.sh	add script to reset the tool shed for testing purpose	Aug 12, 2013

Repository files navigation

Galaxy Tool wrappers

This repository contains a variety of different tools that can be installed and used inside the Galaxy.

Many tools are already included in the Galaxy Tool Shed, others needs some more love (see ToDo list).

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

Galaxy Tool wrappers

About

Releases

Packages

Languages

davebx/galaxytools

Folders and files

Latest commit

History

Repository files navigation

Galaxy Tool wrappers

About

Resources

Stars

Watchers

Forks

Releases

Packages 0

Languages

Packages