Random Forest Patient Level Prediction of Alzheimer's Disease 10 years in advance using EHR data. Includes a permuted feature importance (PFI) analysis.
To replicate:
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Instantiate the two cohort definitions in the cohort-definitions folder
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Install the R PatientLevelPrediction package using the code ADRandomForestJune2022-Atlas (use RStudio to help)
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Configure the code in [ADRandomForestJune2022-Atlas/extras/CodeToRun.R] to connect to your database
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Run the code and review the output