Skip to content

Edit AI for biology . #24

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 1 commit into
base: main
Choose a base branch
from
Open

Edit AI for biology . #24

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
52 changes: 46 additions & 6 deletions practicals/AI_for_Biology/AI_for_Biology.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -58,6 +58,52 @@
"We can also already install and import all of the required packages:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"!python --version"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Installations\n",
"!pip install transformers datasets\n",
"!pip install biopython requests h5py\n",
"!pip install jax\n",
"!pip install flax\n",
"!pip install matplotlib seaborn scikit-learn"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from importlib.metadata import version\n",
"\n",
"pkgs = [\n",
" \"transformers\", \n",
" \"datasets\",\n",
" \"biopython\",\n",
" \"jax\",\n",
" \"flax\",\n",
" \"matplotlib\",\n",
" \"seaborn\",\n",
" \"scikit-learn\"\n",
" ]\n",
"\n",
"for p in pkgs:\n",
" print(f\"{p} version: {version(p)}\")"
]
},
{
"cell_type": "code",
"execution_count": 49,
Expand All @@ -71,12 +117,6 @@
"# @title Install and import required packages. (Run Cell)\n",
"%%capture\n",
"\n",
"# Installations.\n",
"!pip install transformers datasets\n",
"!pip install biopython requests h5py\n",
"!pip install jax\n",
"!pip install flax\n",
"\n",
"# Imports.\n",
"import os\n",
"import random\n",
Expand Down