run unit tests #226
Workflow file for this run
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| name: run-unit-tests | |
| run-name: run unit tests | |
| on: | |
| pull_request: | |
| branches-ignore: ["release-please*"] | |
| paths: | |
| - ".github/actions/**" | |
| - ".github/workflows/**" | |
| - "conda-recipe/**" | |
| - "genome_kit/**" | |
| - "setup.py" | |
| - "setup/**" | |
| - "src/**" | |
| - "tests/**" | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| platform: [["linux-64", "ubuntu-latest"], ["osx-64", "macos-latest"]] | |
| runs-on: ${{ matrix.platform[1] }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/build-gk | |
| with: | |
| platform: ${{ matrix.platform[0] }} | |
| test: | |
| needs: build | |
| strategy: | |
| matrix: | |
| python-version: [["39", "3.9"], ["310", "3.10"]] | |
| platform: [["linux-64", "ubuntu-latest"], ["osx-64", "macos-latest"]] | |
| runs-on: ${{ matrix.platform[1] }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: get meta.yaml from conda-forge for cache key calculation | |
| uses: ./.github/actions/curl-meta-yaml | |
| - name: restore mamba env | |
| id: restore_mamba_cache | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: mamba-env-${{ runner.os }}-${{ runner.arch }}-${{ hashFiles('.github/workflows/run-tests.yaml', '.github/actions/**') }} | |
| path: | | |
| ~/micromamba | |
| ~/.condarc | |
| ~/bin/micromamba | |
| fail-on-cache-miss: true | |
| - name: restore the gk package tarballs | |
| id: restore_gk_pkg | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: mamba-env-${{ runner.os }}-${{ runner.arch }}-${{ hashFiles('.github/workflows/run-tests.yaml', '.github/actions/**', 'conda-recipe/meta.yaml', 'src/**', 'genome_kit/**', 'tests/**') }} | |
| path: | | |
| ~/conda-bld | |
| fail-on-cache-miss: true | |
| - name: install mamba | |
| uses: ./.github/actions/install-mamba | |
| with: | |
| installer-url: https://micro.mamba.pm/api/micromamba/${{ matrix.platform[0] }}/1.5.7 | |
| - name: create test env | |
| shell: bash -l -e {0} | |
| run: | | |
| set -x | |
| if [ ! -d "${HOME}/micromamba/envs/test" ]; then | |
| micromamba create -yqn test -c conda-forge \ | |
| boa==0.16.0 mamba==1.5.7 conda==24.1.2 coverage | |
| fi | |
| set +x | |
| - name: run unittests | |
| id: run_unittests | |
| shell: bash -l -e {0} | |
| run: | | |
| set -x | |
| micromamba activate test | |
| conda index ~/conda-bld | |
| conda mambabuild --croot /tmp/conda-bld -t ~/conda-bld/*/*py${{ matrix.python-version[0] }}*.tar.bz2 --extra-deps python=${{ matrix.python-version[1] }} | |
| conda clean -it | |
| set +x |