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computeMatrix scale-regions A region that is shorter than the bin size

Status: Open.

#1411 In deeptools/deepTools;

· sunta3iouxos opened on Jul 15, 2025

plotFingerprint results depend on BAM file order — input sorting needed

Status: Open.

#1410 In deeptools/deepTools;

· QuentinDuvertCurie opened on Jul 15, 2025

Add a param in plotHeatmap to choose the color of the summary profile

Status: Open.

#1409 In deeptools/deepTools;

· lldelisle opened on Jul 8, 2025

some blank regions show in the plotHeatmap plot

Status: Open.

#1407 In deeptools/deepTools;

· wddyzxxx opened on Jul 4, 2025

Help interpreting these heatmaps/profiles

Status: Open.

#1405 In deeptools/deepTools;

· pterzian opened on Jun 16, 2025

RPGC normalization (--normalizeUsing RPGC) is not supported with bamCompare!

Status: Open.

#1404 In deeptools/deepTools;

· ps-puneetsharma opened on May 28, 2025

The enrichment of signal values near the TSS on the sense and antisense strands

Status: Open.

#1403 In deeptools/deepTools;

· yfZhang99 opened on May 16, 2025

heatmap appears just dark but plot profiles look great

Status: Open.

#1402 In deeptools/deepTools;

· sahuno opened on May 9, 2025

how to recenter diverging color scheme

Status: Open.

#1400 In deeptools/deepTools;

· jayoung opened on May 5, 2025

installation failed of deeptools

Status: Open.

#1392 In deeptools/deepTools;

· yiwangxi-tech opened on Apr 12, 2025

Using alignmentsh can cause a bgzf_read_block error in the bam file

Status: Open.

#1388 In deeptools/deepTools;

· Zifeng0709 opened on Mar 19, 2025

AttributeError: 'list' object has no attribute 'name'

Status: Open.

#1385 In deeptools/deepTools;

· szakallasn3 opened on Mar 5, 2025