[universal] - Update pinned toolings and removal of python libraries

[Kaniska244]

Ref: https://github.com/devcontainers/internal/issues/184

Devcontainer Image:

• universal

Description of changes:

• Updates multiple pinned toolings of Java, javascript-node, dotnet, php and ruby in universal image.
• Also removed the machine learning internal packages to save space. Therefore following python machine learning specific libraries won't be shipped with the universal image next release onwards. Users are requested to use conda instead which is shipped with the image, to install the required libraries.
  1. numpy
  2. pandas
  3. scipy
  4. matplotlib
  5. seaborn
  6. scikit-learn
  7. torch
  8. plotly
• Further removed the installation of npm 9.8.1 which was manually installed in past to override the then available vulnerable npm version, GHSA-c2qf-rxjj-qqgw. This is not needed anymore as we have npm 10 and 11 versions available with node 22 and 24 respectively.
• Changes in the setup-user build script to avoid applying blanket chown command in /opt/ and home directory as Docker uses a copy-on-write filesystem. When the file metadata is changed(like ownership with chown), docker doesn't just update the metadata - it creates a complete copy of the file in the new layer, instead apply the command on specific directories as deemed necessary to allow Oryx to install different versions of dotnet and php.

Changelog:

• Multiple pinned toolings of java, javascript-node, dotnet, php and ruby in universal image.
• Excluded internal features such as machine-learning-packages, patch-python from the build process.
• Removed manual installation of npm 9.8.1 from setup-user build script.
• Apply targeted specific permission on directories as deemed necessary to allow Oryx to install different versions of dotnet and php
• Version bump.
• Small change in test script

Checklist:

• All checks are passed.

[Copilot]

Pull Request Overview

This PR bumps the universal image to version 5.0.0, introducing breaking changes to default language versions and removing the machine-learning-packages feature.

• Major version bump from 4.1.1 to 5.0.0 in manifest.json
• Updates default versions for Node.js (22→24), .NET (8.0→10.0), Java (21→25), PHP (8.4.2→8.4.8), and Ruby (3.4.1→3.4.7)
• Removes machine-learning-packages feature and related Python package tests

Reviewed Changes

Copilot reviewed 4 out of 4 changed files in this pull request and generated 2 comments.

File	Description
src/universal/manifest.json	Bumps version to 5.0.0 and adds trailing space to annotation
src/universal/.devcontainer/devcontainer.json	Updates language versions, removes machine-learning-packages and patch-python features
src/universal/.devcontainer/local-features/setup-user/install.sh	Removes temporary npm security fix workaround
src/universal/test-project/test.sh	Updates Node version test from 22 to 24, removes ML package tests