v1.2.3
DeepVariant configuration fine-tuning:
- Set
unifier_config::max_alleles_per_site=32
to prevent excessive PL blowup (#201 @xunjieli).- Alleles exceeding this limit are "kicked out" into monoallelic rows.
- Set
genotyper_config::allow_partial_data=true
so that non-called reference bands don't cause non-calling of nearby variants - Fixes several minor bugs in unifier & genotyper causing (rare) copy number discrepancies between gVCF & pVCF