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v1.2.3

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@mlin mlin released this 08 Dec 09:35

DeepVariant configuration fine-tuning:

  • Set unifier_config::max_alleles_per_site=32 to prevent excessive PL blowup (#201 @xunjieli).
    • Alleles exceeding this limit are "kicked out" into monoallelic rows.
  • Set genotyper_config::allow_partial_data=true so that non-called reference bands don't cause non-calling of nearby variants
  • Fixes several minor bugs in unifier & genotyper causing (rare) copy number discrepancies between gVCF & pVCF

glnexus_cli docker image: quay.io/mlin/glnexus:v1.2.3