Published in mSphere Journals:
Rapid in vitro evolution of flucytosine resistance in Candida auris
- Main workflow, data analysis and visualization source code availability: https://github.com/ducminhnguyenle/5FC-Evo-2024/
- SNP variant calling workflow using bulk RNAseq data: SNP calling workflow
- SNP variant annotation and profiling from RNAseq datasets: SNP annotation
- WGS data analysis and variant annotation: WGS analysis
- Cut-off 80% ALT reads: WGS analysis
- Cut-off 40% ALT reads: WGS analysis
- CNV calling from WGS data: CNV analysis
- Docking analysis for single and multiple ligands simultaneously: Docking