'DataFrame' object has no attribute 'k' #114
Description
Thank you for the package. I recently updated to 1.7.0
For my particular data, this used to run without error in v.1.6.0
cnmf_obj_corrected.k_selection_plot(close_fig=False)Now I get this error
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
Input In [12], in <cell line: 1>()
33 cnmf_obj_corrected.factorize(worker_i=0, total_workers=NUM_WORKERS)
34 cnmf_obj_corrected.combine(skip_missing_files=True)
---> 35 cnmf_obj_corrected.k_selection_plot(close_fig=False)
36 cnmf_obj_corrected.consensus(
37 k=MIN_COMPONENT,
38 density_threshold=0.1,
39 show_clustering=True,
40 close_clustergram_fig=False
41 )
42 else:
File ~/.conda/envs/cNMF/lib/python3.10/site-packages/cnmf/cnmf.py:1142, in cNMF.k_selection_plot(self, close_fig)
1138 ax1 = fig.add_subplot(111)
1139 ax2 = ax1.twinx()
-> 1142 ax1.plot(stats.k, stats.silhouette, 'o-', color='b')
1143 ax1.set_ylabel('Stability', color='b', fontsize=15)
1144 for tl in ax1.get_yticklabels():
File ~/.conda/envs/cNMF/lib/python3.10/site-packages/pandas/core/generic.py:6299, in NDFrame.__getattr__(self, name)
6292 if (
6293 name not in self._internal_names_set
6294 and name not in self._metadata
6295 and name not in self._accessors
6296 and self._info_axis._can_hold_identifiers_and_holds_name(name)
6297 ):
6298 return self[name]
-> 6299 return object.__getattribute__(self, name)
AttributeError: 'DataFrame' object has no attribute 'k'
I'm not sure why this has changed.