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Switch Use_highly_variable to mask_var="highly_variable" in Preprocess

bugSomething isn't workingSomething isn't working

Status: Open.

#125 In dylkot/cNMF;

· dylkot opened on Nov 6, 2025

log10 n_counts plot in filter_adata

bugSomething isn't workingSomething isn't working

Status: Open.

#124 In dylkot/cNMF;

· dylkot opened on Nov 6, 2025

Recommendation on using cNMF for sample-level subtyping

Status: Open.

#123 In dylkot/cNMF;

· linlejiang opened on Oct 29, 2025

Confirm the input data type running cNMF

Status: Open.

#122 In dylkot/cNMF;

· skye187 opened on Oct 8, 2025

Could you please add a scVI batch effect removal module to the package?

Status: Open.

#120 In dylkot/cNMF;

· ZengLi2 opened on Jul 10, 2025

Could you please add a scVI batch effect removal module to the package?

Status: Open.

#119 In dylkot/cNMF;

· ZengLi2 opened on Jul 10, 2025

Question about parallel acceleration in the preprocess module

Status: Open.

#118 In dylkot/cNMF;

· Kleinzhang99 opened on May 26, 2025

Error: The usage_norm is NaN

Status: Open.

#116 In dylkot/cNMF;

· BioinfoXP opened on May 11, 2025

how to choose k

Status: Open.

#115 In dylkot/cNMF;

· Sophielsn opened on Apr 29, 2025

'DataFrame' object has no attribute 'k'

Status: Open.

#114 In dylkot/cNMF;

· james-cranley opened on Mar 5, 2025

Error when using option "--skip-completed-runs" at factorization step

Status: Open.

#110 In dylkot/cNMF;

· Tang-YH opened on Feb 19, 2025

Cophenetic correlation plot

Status: Open.

#101 In dylkot/cNMF;

· Rafael-Silva-Oliveira opened on Oct 18, 2024