removed test.h5ad and downloads it from zenodo

ebi-gene-expression-group · Dec 18, 2023 · 0f0a4e2 · 0f0a4e2
1 parent e14317f
commit 0f0a4e2
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Showing 2 changed files with 10 additions and 1 deletion.
diff --git a/tools/tertiary-analysis/decoupler/get_test_data.sh b/tools/tertiary-analysis/decoupler/get_test_data.sh
@@ -21,8 +21,17 @@ pushd test-data
 get_data $MTX_LINK $BASENAME_FILE
 
 
+# Download input anndata for decoupler-pathway_inference
 BASENAME_FILE='pbmc3k_processed.h5ad'
 
 MTX_LINK='https://zenodo.org/records/3752813/files/pbmc3k_processed.h5ad'
 
-get_data $MTX_LINK $BASENAME_FILE
+get_data $MTX_LINK $BASENAME_FILE
+
+# Download output anndata for decoupler-pathway_inference
+BASENAME_FILE='test.h5ad'
+
+MTX_LINK='https://zenodo.org/records/10401958/files/test.h5ad'
+
+get_data $MTX_LINK $BASENAME_FILE
+
diff --git a/tools/tertiary-analysis/decoupler/test-data/test.h5ad b/tools/tertiary-analysis/decoupler/test-data/test.h5ad