Update scanpy-filter-cells.xml adds assert to test output

ebi-gene-expression-group · Feb 15, 2024 · e334e38 · e334e38
1 parent 22f1e24
commit e334e38
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/tools/tertiary-analysis/scanpy/scanpy-filter-cells.xml b/tools/tertiary-analysis/scanpy/scanpy-filter-cells.xml
@@ -88,7 +88,11 @@ PYTHONIOENCODING=utf-8 scanpy-filter-cells
         <param name="min" value="0"/>
         <param name="max" value="1e9"/>
       </repeat>
-      <output name="output_h5" file="filter_cells.h5" ftype="h5" compare="sim_size" delta_frac="0.1"/>
+      <output name="output_h5" ftype="h5">
+        <assert_contents>
+          <has_h5_keys keys="obs/n_genes_by_counts"/>
+        </assert_contents>
+      </output>
     </test>
   </tests>