Try unpinning umap-learn (#103)

* Try unpinning umap-learn * Add Py3.9 to the CI * Add explicit hdf5 dependency * Revert "Add explicit hdf5 dependency" This reverts commit 828159e. * Add lihdf5 to the env * Fix dependency order * Fix binutils * Try older ubuntu * Revert "Try older ubuntu" This reverts commit e9c1f02. * Revert "Fix binutils" This reverts commit e08af28. * Revert "Add Py3.9 to the CI" This reverts commit 23041ad.
ebi-gene-expression-group · Jul 13, 2021 · f9fbe75 · f9fbe75
1 parent 4bc7499
commit f9fbe75
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diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
@@ -25,6 +25,7 @@ jobs:
 
     - name: Install dependencies
       run: |
+        sudo apt-get install libhdf5-dev
         pip install -U setuptools>=40.1 wheel 'cmake<3.20'
         pip install .
     

diff --git a/setup.py b/setup.py
@@ -47,7 +47,7 @@
         'loompy',
         'MulticoreTSNE',
         'Click<8',
-        'umap-learn<0.4.0',
+        'umap-learn',
         'harmonypy>=0.0.5',
         'bbknn>=1.5.0',
         'mnnpy>=0.1.9.5',