get_homologues-est
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This is release 31032016 (v2.0.13) of GET_HOMOLOGUES, which ships with a few fixes:
- parse_pangenome_matrix.pl now prints -P & -S values to pangenes_list.txt
- parse_pangenome_matrix.pl barplots produced with -s have longer Y-axes, which can now be controlled with global $YLIMRATIO
- get_homologues manual updated, including figures 12 & 13
- marfil_homology::find_COGs made faster after trimming a couple of regexes and replacing grep with (first)[http://perldoc.perl.org/List/Util.html#first], thanks Andre Luiz de Oliveira!
- updated test_Streptococcus/test_Streptococcus_download_list.txt
- FAQ added to get_homologues-est manual