Validation of the tools and page metadata #834
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Validation of the tools and page metadata | |
| on: | |
| pull_request: | |
| branches: [ master, main ] | |
| schedule: | |
| - cron: '0 13 * * 1' | |
| workflow_dispatch: | |
| jobs: | |
| validation: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install ruamel.yaml requests python-frontmatter | |
| - name: Run tool table 2 yaml | |
| run: | | |
| python var/tools_validator.py | |
| registry-lookup: | |
| if: | | |
| github.repository_owner == 'elixir-europe' && github.event_name != 'pull_request' | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install ruamel.yaml requests python-frontmatter | |
| - name: Run regsitry lookup for the tools file | |
| run: | | |
| python var/tools_validator.py --reg --username ${{ secrets.FAIRSHARING_USERNAME }} --password "${{ secrets.FAIRSHARING_PASSWORD }}" | |
| - name: Show differences | |
| run: | | |
| git diff --stat | |
| - name: Create Pull Request | |
| id: cpr | |
| uses: peter-evans/create-pull-request@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| commit-message: Update tool/resource_list.yaml | |
| title: 'Automatic tool/resource-list update' | |
| body: | | |
| This PR is automatically generated based on new links made between the tools and the registries: TeSS, Bio.tools and FAIRsharing. | |
| Please verify if these changes are valid. | |
| labels: | | |
| automatic PR | |
| reviewers: bedroesb | |
| branch: list_updates | |
| base: main | |
| - name: Check output | |
| run: | | |
| echo "Pull Request Number - ${{ steps.cpr.outputs.pull-request-number }}" |