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ROBOT workflows #716

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@jmillanacosta jmillanacosta commented Mar 25, 2025 •
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This PR:

  • replaces slimmer for ROBOT for sustainability.
    • Class hierarchy is replicated
    • iris config files remain the same, and are converted to the appropriate ROBOT templates on build time
    • Implementing templates, mainly thought to add design patterns.
  • Fixes annotation of slims:
    image
  • More: faster build runs, closer to OBO Foundry recommendations, discovered a few errors in old config file lines.

@jmillanacosta jmillanacosta mentioned this pull request Mar 25, 2025
Merged
24 tasks
jmillanacosta and others added 21 commits March 26, 2025 15:16
@jmillanacosta
Term requests before release 11 (#718)
ac2fc7b 
* Fix reciprocal EC50 subClass

* Test build on PR

* Add magnetism

* Add ionization energy

* Add cell membrane alteration

* Term request #631 hidrophilicity

* Add crystallite size #627

* Solve #557

* Add scherrer diameter #630

* Grain size #628

* Add ionic strength #522

* Fix Mechanical properties #555

* Silver nanoforms #508
@actions-user
Actions - slim updated
777ac4c
@jmillanacosta
Fix gas molecular gas entity
b03914d
@jmillanacosta @actions-user
Chemical compositions (#722)
671c68f 
* Add lipid

* Add graphene

* Add carbohydrate

* Added more substance and molecular entities

* Add polymers

* Add silicon mol entity

* Add cadmium mol entity

* Add oxides, polymers, mixtures

* Add metalloid atom

* Add agar

* Add silicon molecular entity

* Actions - slim updated

---------

Co-authored-by: Slimmer bot <[email protected]>
@jmillanacosta @actions-user
Several terms added (#723)
a6bc379 
* Fix reciprocal EC50 subClass

* Test build on PR

* Add magnetism

* Actions - slim updated

* Add ionization energy

* Add cell membrane alteration

* Term request #631 hidrophilicity

* Add crystallite size, solves #627

* Solve #557

* Add scherrer diameter solve #630

* Grain size #628

* Fix subclassof axiom

* Add ionic strength

* Fix Mechanical properties #555

* Silver nanoforms, fix hierarchy #508

* Patch efo and nanoforms

* Add chemical composition templating workflow

---------

Co-authored-by: Slimmer bot <[email protected]>
@jmillanacosta
Import chemical compositions module into auto-dev
b4bfd2e
@jmillanacosta
Fix separator
c4ef663
@jmillanacosta
Fix separator
0073525
@actions-user
Actions - slim updated
f31c8bf
@jmillanacosta
Comment out line temporarily to avoid errors
7a3a711
@jmillanacosta
Add chemical compositions import
4b3a533
@jmillanacosta
Build with ROBOT
ee61407
@jmillanacosta
Remove props steps
b877a74
@jmillanacosta
Bump ROBOT to v1.9.7
8c0b5b1
@actions-user
Actions - build updated
a50006d
@jmillanacosta
Refactor into matrix for concurrent run
ecb60be
@jmillanacosta
Bump actions
13605c8
@jmillanacosta
Fix slim paths
99126fa
@jmillanacosta
Patch workflow
f7ce6ae
@actions-user
Actions - build updated
c633e42
@jmillanacosta
Create missing directories if needed
84fbdd8
jmillanacosta and others added 24 commits April 2, 2025 12:34
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@jmillanacosta @actions-user