fixing a small error in rename_tree_leaves #72
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| # This is a basic workflow to help you get started with Actions | |
| name: Tests | |
| # Controls when the action will run. | |
| on: | |
| push: | |
| branches: [ main, devel ] | |
| paths: | |
| - 'phyluce/**' | |
| - 'bin/**' | |
| - 'workflows/**' | |
| pull_request: | |
| branches: [ main ] | |
| paths: | |
| - 'phyluce/**' | |
| - 'bin/**' | |
| - 'workflows/**' | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| run-linters: | |
| name: Run linters on phyluce | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.6 | |
| - name: Install Python dependencies | |
| run: pip install black flake8 | |
| - name: Run linters | |
| uses: wearerequired/lint-action@v1 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| continue_on_error: false | |
| git_email: "[email protected]" | |
| auto_fix: true | |
| # Enable linters | |
| black: true | |
| flake8: true | |
| build-and-test: | |
| needs: run-linters | |
| name: Build and test phyluce | |
| runs-on: ubuntu-20.04 | |
| # If we set the default shell here, it catches the activated conda | |
| # and we don't need to keep calling it. | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v2 | |
| # setup cache for conda files | |
| - name: Cache conda packages | |
| uses: actions/cache@v1 | |
| env: | |
| # Increase this value to reset cache if | |
| # etc/example-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{hashFiles('etc/phyluce-testing-environment.yml') }} | |
| # we'll use the handy conda incubator miniconda package | |
| - name: Set miniconda up | |
| uses: conda-incubator/[email protected] | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.6 | |
| environment-file: etc/phyluce-testing-environment.yml | |
| - name: Install phyluce to get config, workflows, and paths correct | |
| run: | | |
| pip install . | |
| - name: Run pytest against phyluce | |
| run: | | |
| pytest -vv phyluce/ |