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Inquiry Regarding Incorrect Assignment of Root Cells to Termini During URD Trajectory Tree Construction (Despite Normal Pseudotime Results)

Status: Open.

#91 In farrellja/URD;

· Yukaixu666 opened on Sep 16, 2025

How to fast the calculation of CalcDM

Status: Open.

#90 In farrellja/URD;

· Yukaixu666 opened on Sep 13, 2025

limit.single.sigmoid.slopes

Status: Open.

#89 In farrellja/URD;

· Ruismart opened on Apr 14, 2024

what is tip.walk.files?

Status: Open.

#87 In farrellja/URD;

· wangzitiner opened on May 22, 2023

SupplementaryAnalysis.pdf --- Page 19 --- Batch correct data --- mnnCorrect

Status: Open.

#86 In farrellja/URD;

· zzy0630 opened on May 3, 2023

Installation: big trouble in many packages

Status: Open.

#85 In farrellja/URD;

· wangzitiner opened on Apr 14, 2023

Error in floodPseudotimeProcess

Status: Open.

#84 In farrellja/URD;

· mary77 opened on Jan 31, 2023

Error in visit.data[cells.in.tip, ] : incorrect number of dimensions

Status: Open.

#83 In farrellja/URD;

· zhang929821416 opened on Sep 18, 2022

where is walks.to.do object

Status: Open.

#82 In farrellja/URD;

· xujiahao778899 opened on Aug 21, 2022

determine.timing: Error in peak.rle[peak, "start"]:peak.rle[peak, "end"] : NA/NaN argument

Status: Open.

#81 In farrellja/URD;

· grimwoo opened on Jun 16, 2022

aucprTestByFactor

Status: Open.

#80 In farrellja/URD;

· MedCYLIU opened on Mar 21, 2022

Error in calcTsne and calcDM: length of 'dimnames' [1] not equal to array extent

Status: Open.

#79 In farrellja/URD;

· Sophia409 opened on Dec 6, 2021