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Fix error when saving array with NaNs (occurs with corr_img when use_corr_img is True) #1385

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Aug 9, 2024
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Fix error when saving array with NaNs (occurs with corr_img when use_corr_img is True) #1385

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2 changes: 1 addition & 1 deletion caiman/utils/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -516,7 +516,7 @@ def recursively_save_dict_contents_to_group(h5file:h5py.File, path:str, dic:dict
except:
item = np.array(item).astype('|S32')
h5file[path + key] = item
if not np.array_equal(h5file[path + key][()], item):
if not np.array_equal(h5file[path + key][()], item, equal_nan=item.dtype == 'f'): # just using True gives "ufunc 'isnan' not supported for the input types"
raise ValueError(f'Error while saving ndarray {key} of dtype {item.dtype}')
# save dictionaries
elif isinstance(item, dict):
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