flika

flika is an interactive image processing program for biologists written in Python.

Website

flika-org.github.io

Documentation

flika-org.github.io/contents.html

Install

flika-org.github.io/getting-started.html#installation

Development

This is how Kyle installs Flika for development on a mac.

brew install [email protected]
python3.13 -m venv ~/venvs/flika; source ~/venvs/flika/bin/activate.fish; python -m pip install --upgrade pip;
cd ~/git
git clone https://github.com/flika-org/flika.git
cd ~/git/flika
python -m pip install -e .
ipython
In [1]: import flika
In [2]: flika.start_flika()

For tests:

pip install -e .[dev]
pytest flika --cov=flika

Cleanup :

deactivate
rm -r ~/venvs/flika

Contributors

• Kyle Ellefsen
• Brett Settle
• George Dickinson
• Kevin Tarhan

Development

• Ruff is used for linting/formatting
• VSCode/Cursor is the usually IDE
• Python 3.13 is the (current) development version
• PySide6 is used for the GUI