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[Improvement] Merging segment files from copy number alteration pipelines

Status: Open.

#231 In fritzsedlazeck/SURVIVOR;

· GACGAMA opened on Jul 23, 2025

duplicate column in simulated bed file

Status: Open.

#230 In fritzsedlazeck/SURVIVOR;

· thom-99 opened on Jul 21, 2025

error in parsing the header : 'Could not parse the "#CHROM.." line, either FORMAT is missing or spaces are present instead of tabs:'

Status: Open.

#229 In fritzsedlazeck/SURVIVOR;

· thom-99 opened on Jul 21, 2025

Sorting problem with output vcf files

Status: Open.

#227 In fritzsedlazeck/SURVIVOR;

· zhujiahua700403 opened on Apr 6, 2025

POS and REF Inconsistencies in SURVIVOR Merge

Status: Open.

#226 In fritzsedlazeck/SURVIVOR;

· leechiehyu opened on Dec 25, 2024

The missing genotype (./.) can be interpreted as a (0/0) genotype

Status: Open.

#224 In fritzsedlazeck/SURVIVOR;

· KrithikaSubramanian opened on Nov 13, 2024

simreads fastq format

Status: Open.

#223 In fritzsedlazeck/SURVIVOR;

· sagarc88 opened on Oct 25, 2024

get tumor.only.vcf

Status: Open.

#222 In fritzsedlazeck/SURVIVOR;

· DayTimeMouse opened on Oct 1, 2024

How ca I merged same samples called by different tools without duplicating IDs?

Status: Open.

#221 In fritzsedlazeck/SURVIVOR;

· itsmestewart opened on Sep 17, 2024

SURVIVOR always skipping 1 vcf file

Status: Open.

#220 In fritzsedlazeck/SURVIVOR;

· Anees-caas opened on Sep 4, 2024

Index the SURVIVOR VCF file

Status: Open.

#218 In fritzsedlazeck/SURVIVOR;

· ywzhang071394 opened on Aug 29, 2024

mangled header

Status: Open.

#217 In fritzsedlazeck/SURVIVOR;

· tzvi909 opened on Aug 19, 2024