Search results

[question] What does the GT filter refer to?

Status: Open.

#591 In fritzsedlazeck/Sniffles;

· druenooyen opened on Oct 15, 2025

Pooled samples and mosaic option

Status: Open.

#590 In fritzsedlazeck/Sniffles;

· SheepwormJM opened on Oct 7, 2025

Support for MATEID when reporting breakends with known mates?

Status: Open.

#589 In fritzsedlazeck/Sniffles;

· roland-ewald opened on Sep 29, 2025

[question]: Recommendations on how to go about using "--phase" with "--mosaic"

Status: Open.

#587 In fritzsedlazeck/Sniffles;

· tamuanand opened on Sep 24, 2025

--no-progress still prints progress

enhancement

Status: Open.

#584 In fritzsedlazeck/Sniffles;

· 0xaf1f opened on Sep 15, 2025

· 

2.7

Missed SVs

Status: Open.

#582 In fritzsedlazeck/Sniffles;

· leonschuetz opened on Sep 8, 2025

Sniffles 2.6.3 PRECISE deletion: END off by one vs SVLEN/REF

bug

Status: Open.

#580 In fritzsedlazeck/Sniffles;

· themkdemiiir opened on Sep 5, 2025

· 

2.7

Parameter suggestions for Sniffles to detect transposable elements from ONT data

Status: Open.

#578 In fritzsedlazeck/Sniffles;

· amarkez opened on Aug 13, 2025

Call large indel with small genomes

Status: Open.

#577 In fritzsedlazeck/Sniffles;

· ChenddatHKU opened on Aug 7, 2025

How does sniffles2 mosaic mode calculate mismatches for SV filtering

Status: Open.

#576 In fritzsedlazeck/Sniffles;

· QichenFU opened on Aug 4, 2025

Obvious break ends (BND) not being called?

Status: Open.

#575 In fritzsedlazeck/Sniffles;

· jrosenkrantz-twist opened on Jul 24, 2025

Population mode missing variants

Status: Open.

#573 In fritzsedlazeck/Sniffles;

· Will-Tyler opened on Jun 26, 2025