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Releases: fulcrumgenomics/commons

1.6.0

20 Mar 19:28
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What's Changed

  • feat: expose the header in Row by @nh13 in #88

Full Changelog: 1.5.0...1.6.0

1.5.0

13 Mar 05:08
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What's Changed

  • Create CODEOWNERS by @tfenne in #84
  • Migrate ubuntu-latest to ubuntu-24.04 by @nh13 in #85
  • Add fulcrum genomics more prominently by @nh13 in #86
  • Add a reset method to ReflectiveBuilder by @nh13 in #82

Full Changelog: 1.4.0...1.5.0

v1.4.0

11 Mar 16:22
9372c55
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What's Changed

Major changes:

  • Removed support for scala 2.12 by @tfenne in #77
  • A parallel iterator implementation. by @tfenne in #76, that allow parallelization of iterators in a similar fashion to parallel collections without the user having to worry about batching

Minor changes:

  • SimpleCounter iterators are in insertion order by @nh13 in #73
  • Add support for reading from Unix/Posix pipes (fifos) by @nh13 in #57
  • Make sure IntelDeflator is shown as unsupported on non-x86 Apple machines e.g. M1x.

Full Changelog: 1.3.0...1.4.0

1.3.0

11 Jan 07:15
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This release contains a single bug fix:

  • Fix AsyncIterator race condition when first element in source raises (#74)

Thank-you to Clint Valentine (@clintval)!

1.2.0

19 Oct 19:50
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This release includes various minor enhancements:

  • #63 Add a type alias for a sequence dictionary
  • #66 Fix for DelimitedDataParser.Row.get returning Some(" ") instead of returning None when allowMissingColumn flag is set
  • #67 Sanitize file name now truncates files to avoid filesystem errors on names larger than 255 characters
  • #68 Use thread-safe DateTimeFormatter in log emissions
  • #72 Add a least recently used cache collection

Release 1.1.0

24 Aug 12:49
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This release includes various minor enhancements:

  • Automatic gzip format detection in Io and ability to control compression level on writing of gzipped files
  • StringUtil.split can now return remaining text in the last element when there is overflow
  • New class SystemUtil for accessing information about the OS/system

Release 1.0.0

06 Aug 19:21
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The major feature of this release is moving cross-building support to scala 2.12 and 2.13 and dropping support for 2.11. In addition to making cross-building work for the project, commons includes a new Compat trait that is mixed into CommonsDef and supplies a small number of type definitions and implicits to make cross-building simpler.

Release 0.7.0

13 Feb 23:54
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Minor release that includes:
• Compiling using the latest point releases of the 2.11 and 2.12 scala compilers that produce JDK 9 and 10 compatible classes
• Added a raw String accessor to DelimitedDataParser.Row to make String access much faster when working with large files

Release 0.6.1

06 Nov 17:47
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Minor upgrade with the following improvements:

  • Better error message when reflectively construct a class but no one-arg string constructor is found (#28)
  • Added Io.readBytesFromResources() to read binary data (#33)
  • Adding a StringUtil.split method for faster String splitting (#34)
  • Adding a += method to SimpleCounter (#34)
  • Adding maxN and maxNBy methods (#34)
  • Adding some generic utility classes related to asynchronous processing, reading, writing, and iterating over items
  • A more general pooling mechanism for asynchronous writers (#35)
  • Workaround for Files.newInputStream() returning a stream that's incompatible with stdin (#36)
  • Updating to sbt 1.2.6

Note: there is no 0.6.0 release due to sbt and sbt-pgp having a bug not allowing us to release that version.

Release 0.5.0

05 Apr 18:32
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Minor upgrade with the following improvements:

  • Added Configuration class for accessing TypeSafe config in a, ahem, type-safe way
  • Widened Io.writeLines to take TraversableOnce[String] instead of Seq[String]
  • Updated Io.readLinesFromResource to work for relative and absolute resource paths with and without leading /s
  • Improved the error message when trying to reflectively construct enum values