Skip to content
@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

Popular repositories Loading

  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 218 112

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 203 48

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 98 91

  4. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 88 37

  5. phenopacket-schema phenopacket-schema Public

    Repository for the GA4GH phenopacket schema

    Java 85 31

  6. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    84 39

Repositories

Showing 10 of 129 repositories
  • quality-control-wgs Public

    Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

    ga4gh/quality-control-wgs’s past year of commit activity
    Jupyter Notebook 14 Apache-2.0 4 11 6 Updated Apr 25, 2025
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    ga4gh/vrs-python’s past year of commit activity
    Python 55 Apache-2.0 32 53 (1 issue needs help) 4 Updated Apr 24, 2025
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 18 Apache-2.0 6 116 (2 issues need help) 2 Updated Apr 24, 2025
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Makefile 3 Apache-2.0 3 20 (3 issues need help) 0 Updated Apr 24, 2025
  • Get-Started-with-GA4GH-APIs Public

    ISMB 2022 tutorial on FASP and Starter Kit

    ga4gh/Get-Started-with-GA4GH-APIs’s past year of commit activity
    Jupyter Notebook 6 Apache-2.0 2 5 1 Updated Apr 24, 2025
  • va-spec-python Public

    GA4GH Variation Annotation Python Implementation

    ga4gh/va-spec-python’s past year of commit activity
    Python 1 Apache-2.0 2 2 1 Updated Apr 22, 2025
  • ga4gh-starter-kit-common Public

    Common utils library for GA4GH Starter Kit web services

    ga4gh/ga4gh-starter-kit-common’s past year of commit activity
    Java 1 Apache-2.0 2 6 2 Updated Apr 16, 2025
  • htsget-compliance Public

    Compliance testing for htsget deployments

    ga4gh/htsget-compliance’s past year of commit activity
    Python 1 Apache-2.0 3 2 (2 issues need help) 0 Updated Apr 14, 2025
  • schema-registry Public

    Specification for schema registry API

    ga4gh/schema-registry’s past year of commit activity
    0 Apache-2.0 0 8 0 Updated Apr 8, 2025
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 88 Apache-2.0 37 25 (2 issues need help) 0 Updated Apr 3, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…