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add special case for BAM files in RStudio #20692

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bgruening
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If anyone has an idea how we can make this more generic, that would be nice.

Ideally that would work more like Juypter, but for the time being.

@github-actions github-actions bot added this to the 25.1 milestone Jul 23, 2025
@bernt-matthias
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bernt-matthias commented Jul 24, 2025

What are people doing with bam files in R? Wondering if R is the right tool.

If anyone has an idea how we can make this more generic, that would be nice.

We would need

But sure what of this is possible.

@mvdbeek
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mvdbeek commented Jul 24, 2025

Since you have the entire app object dangling off of the various things we bring in with Cheetah, the answer is always "all of it is possible", unfortunately. get_metadata_file_paths_and_extensions() on a dataset will give you a list of tuples with extension and path to the file parameter.

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