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Merge 25.0 into dev #20724

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Merge 25.0 into dev #20724

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@mvdbeek mvdbeek commented Aug 1, 2025

(Please replace this header with a description of your pull request. Please include BOTH what you did and why you made the changes. The "why" may simply be citing a relevant Galaxy issue.)
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mvdbeek and others added 9 commits June 19, 2025 12:57
We really have to eliminate that input_datasets dictionary - this is very hacky. Maybe we can take a pass at rewriting Pulsar staging after we have stronger typing in the tool state branch for this stuff. Now we're putting multiple copies of an HDA into the deferred object structure - so I am now caching them during materialization so we don't materialize them more than once - this was probably needed anyway regardless since an input can be supplied to a tool more than once.
…le_25_0

[25.0] Fix deferred datasets in multiple dataset parameters.
…scheduling_iteration_loop

[25.0] Improve workflow monitor loop times
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