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@gear-genomics

GEAR

Genome Analysis Server

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  1. tracy tracy Public

    Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

    C++ 99 21

  2. dicey dicey Public

    In-silico PCR, primer design and padlock design for in-situ sequencing

    C++ 49 4

  3. indigo indigo Public

    Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

    JavaScript 31 7

  4. wily-dna-editor wily-dna-editor Public

    The Wily-DNA-Editor is a browser tool for plasmid assembly, reverse complements DNA, translates to protein code and calculates restriction digests maps.

    JavaScript 12 1

  5. silica silica Public

    In-silico PCR amplification on complete genomes

    JavaScript 9

  6. ancient ancient Public

    Ancestry inference with convolutional neural networks

    Vue 9 2

Repositories

Showing 10 of 25 repositories
  • tracy Public

    Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

    gear-genomics/tracy’s past year of commit activity
    C++ 99 BSD-3-Clause 21 9 1 Updated Oct 31, 2024
  • pearl Public

    Patching references via trace assemblies

    gear-genomics/pearl’s past year of commit activity
    JavaScript 2 GPL-3.0 2 5 1 Updated Oct 31, 2024
  • halo Public

    haplotype processor

    gear-genomics/halo’s past year of commit activity
    C++ 3 GPL-3.0 1 0 0 Updated Oct 31, 2024
  • indigo Public

    Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

    gear-genomics/indigo’s past year of commit activity
    JavaScript 31 GPL-3.0 7 1 0 Updated Oct 31, 2024
  • sage Public

    Sanger Trace Alignment

    gear-genomics/sage’s past year of commit activity
    JavaScript 4 GPL-3.0 0 0 0 Updated Oct 31, 2024
  • saint Public

    [WIP] saint (similarity hunter): Rapid DNA similarity search against entire genomes.

    gear-genomics/saint’s past year of commit activity
    JavaScript 4 1 0 0 Updated Oct 31, 2024
  • teal Public

    Sanger Trace Viewer

    gear-genomics/teal’s past year of commit activity
    JavaScript 7 GPL-3.0 2 1 0 Updated Oct 31, 2024
  • gearlog Public
    gear-genomics/gearlog’s past year of commit activity
    Python 0 0 0 0 Updated Oct 31, 2024
  • sabre Public

    Sequence Alignment Browser

    gear-genomics/sabre’s past year of commit activity
    JavaScript 7 1 0 1 Updated Oct 31, 2024
  • silica Public

    In-silico PCR amplification on complete genomes

    gear-genomics/silica’s past year of commit activity
    JavaScript 9 GPL-3.0 0 0 1 Updated Oct 31, 2024