Update 4.2.x branch #7
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Co-authored-by: Callum Tromans-Coia <[email protected]>
Fix crash in ExportToSpreadsheet when using ExportToDatabase to generate CPA properties files
Skiamge 0.19 compatibility
Note, passes tests without updating them (no tests actually look for object #s)
…metadata Limit headless extraction to only when needed, safeguard for CellProfiler#94
- addresses numpy deprecation warning - part of [cp pr #4576](CellProfiler/CellProfiler#4576)
Replace numpy object check with builtin, addressing deprecation warning
Channelstack for loading in 4+ channel non-volumetric images
- replace `isAlive` method deprecated in python 3.9
…cation Replace depreacted thread liveness check
* setup new workflow file * run on mac * matrix on python versions 3.8 and 3.9 * setup pip wheel caching in workflow * remove cellprofiler dependencies from tests * refactor `test_woker.py` to use core-only modules
- w+ is unsupported by hfpy, and our extension to support it was never used (AFAIK), and semantically incorrect anyway; remove altogether - add x support (alias to w-)
Close h5py file if needed
Bump python-bioformats to 4.0.6
Bump version to 4.2.3
Fix 3D object loading
Don't break when loading with pipes in notes, 4.2.5 edition
Bump centrosome
Update to 4.2.6 series
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Merges in changes from from the mainline CellProfiler repo v4.2.2 --> v4.2.6
I'm also disabling the native telemetry system (Sentry), since our modifications may produce unwanted bug reports.