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Grunwald lab

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  1. metacoder metacoder Public

    Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

    R 144 29

  2. Population_Genetics_in_R Population_Genetics_in_R Public

    A primer for computational tools to analyze genetics of populations in R

    HTML 91 53

  3. poppr poppr Public

    🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction

    R 72 26

  4. analysis_of_microbiome_community_data_in_r analysis_of_microbiome_community_data_in_r Public

    This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/

    HTML 16 14

  5. Reproducible-science-in-R Reproducible-science-in-R Public

    This site provides information on conducting reproducible science using the R language.

    HTML 13 8

  6. krisp krisp Public

    A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.

    Python 13 3

Repositories

Showing 10 of 62 repositories
  • heattree Public

    A wrapper for the javascript `heat-tree` package for interactive phylogenetic tree visualization widgets

    grunwaldlab/heattree’s past year of commit activity
    R 0 0 2 0 Updated Mar 18, 2026
  • pathogensurveillance Public Forked from nf-core/pathogensurveillance

    Surveillance of pathogens using population genomics and sequencing

    grunwaldlab/pathogensurveillance’s past year of commit activity
    Nextflow 4 MIT 7 0 0 Updated Mar 13, 2026
  • PathoSurveilR Public

    Tools to find and manipulate the output of pathogensurveillance

    grunwaldlab/PathoSurveilR’s past year of commit activity
    R 3 1 5 0 Updated Mar 11, 2026
  • ezec Public

    Easy Interface to Effective Concentration Calculations

    grunwaldlab/ezec’s past year of commit activity
    R 1 1 2 1 Updated Mar 9, 2026
  • metaMapWidgetR Public

    R package wrapping meta-map-widget

    grunwaldlab/metaMapWidgetR’s past year of commit activity
    R 0 0 2 0 Updated Feb 27, 2026
  • meta-map-widget Public

    Map widget for the PathogenSurveillance pipeline

    grunwaldlab/meta-map-widget’s past year of commit activity
    JavaScript 0 0 2 0 Updated Feb 16, 2026
  • heat-tree Public

    A self-contained widget for phylogenetic and taxonomic tree visualization with categorical and continuous variables associated with nodes and tips

    grunwaldlab/heat-tree’s past year of commit activity
    JavaScript 0 0 4 0 Updated Feb 10, 2026
  • metacoder Public

    Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

    grunwaldlab/metacoder’s past year of commit activity
    R 144 29 46 0 Updated Feb 6, 2026
  • pathogensurveillance_publications Public

    Documentation for the pathogensurveillance pipeline

    grunwaldlab/pathogensurveillance_publications’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 2, 2026
  • aquisilvae_and_rhizoterrae_description Public

    Analyses used in the description of the new species Globisporangium aquisilvae and Globisporangium rhizoterrae

    grunwaldlab/aquisilvae_and_rhizoterrae_description’s past year of commit activity
    R 0 0 0 0 Updated Jan 5, 2026
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