Search results

No module named 'opentree'

Status: Open.

#52 In harmslab/topiary;

· chenzhao-CZ opened on Mar 27, 2025

Topiary Quite Slow on an HPC System

Status: Open.

#51 In harmslab/topiary;

· AlexT97 opened on Mar 7, 2025

Issue with topiary-bootstrap-reconcile --restart

Status: Open.

#50 In harmslab/topiary;

· cfreye opened on Jan 19, 2025

AttributeError with toytree

Status: Open.

#49 In harmslab/topiary;

· jsodicoff opened on Dec 11, 2024

Recurring TypeError with PrettyTree

Status: Open.

#48 In harmslab/topiary;

· auroraab opened on Nov 22, 2024

Problem with pulling proteome from NCBI--solution found!

Status: Open.

#44 In harmslab/topiary;

· ani-sch opened on May 17, 2024

Error while running seed-to-alignment for proteins without known paralogs

Status: Open.

#42 In harmslab/topiary;

· lbleicher opened on Jun 7, 2023

Running topiary for species that are not on NCBI

Status: Open.

#41 In harmslab/topiary;

· cyhkim opened on May 9, 2023

Notebook fails to build on pycairo

Status: Open.

#40 In harmslab/topiary;

· HWaymentSteele opened on May 8, 2023

seed-to-alignment unable to retrieve proteome for key species

Status: Open.

#39 In harmslab/topiary;

· benclifton opened on Apr 6, 2023

All aditional sequences removed in seed-to-alignment step

Status: Open.

#36 In harmslab/topiary;

· lbleicher opened on Mar 20, 2023

Error in topiary-seed-to-alignment

Status: Open.

#33 In harmslab/topiary;

· lbleicher opened on Feb 23, 2023